| Fresnal Creek | Otero, NM | 9.8 miles | NW |
| Silver Springs Creek | Otero, NM | 12.7 miles | NE |
| Bear Creek | Otero, NM | 13.5 miles | SE |
| Sabinata Flat Arroyo | Otero, NM | 14.9 miles | NW |
| La Luz Creek | Otero, NM | 15.2 miles | NW |
| La Luz Creek | Otero, NM | 17.3 miles | NW |
| Red Arroyo | Otero, NM | 18.7 miles | SW |
| Rinconada Creek | Otero, NM | 20.3 miles | NW |
| Agua Chiquita Creek | Chaves, NM | 23.4 miles | SE |
| Temporal Creek | Otero, NM | 25.6 miles | NW |
| Carrizo Creek | Otero, NM | 26.3 miles | NE |
| Cedar Creek | Lincoln, NM | 26.4 miles | NE |
| North Fork Rio Ruidoso | Otero, NM | 26.6 miles | NW |
| South Fork Rio Ruidoso | Lincoln, NM | 26.7 miles | NW |
| Tularosa Creek | Otero, NM | 26.7 miles | NW |
| Panther Creek | Otero, NM | 27 miles | NW |
| Middle Fork Rio Ruidoso | Otero, NM | 27 miles | NW |
| Lost River | Otero, NM | 27.8 miles | SW |
| Middle Fork Cedar Creek | Otero, NM | 28.8 miles | NE |
| North Fork Cedar Creek | Otero, NM | 29 miles | NE |
| South Fork Cedar Creek | Otero, NM | 29 miles | NE |
| South Fork Eagle Creek | Otero, NM | 30.5 miles | NE |
| South Prong Stevens Creek | Otero, NM | 30.9 miles | SE |
| Indian Creek | Otero, NM | 31.1 miles | NW |
| Fall Creek | Lincoln, NM | 31.8 miles | NW |
| Little Stevens Creek | Otero, NM | 32.6 miles | SE |
| Stevens Creek | Chaves, NM | 33.7 miles | SE |
| Three Rivers | Otero, NM | 34.1 miles | NW |
| South Fork Rio Bonito | Lincoln, NM | 34.9 miles | NW |
| Bonito Creek | Lincoln, NM | 34.9 miles | NW |
| Pendejo Wash | Otero, NM | 35.7 miles | SW |
| Bear Creek | Lincoln, NM | 35.8 miles | NW |
| Little Bonito Creek | Lincoln, NM | 35.8 miles | NW |
| Eagle Creek | Lincoln, NM | 36.4 miles | NE |
| Little Creek | Lincoln, NM | 36.8 miles | NE |
| Salt Creek | Sierra, NM | 37.9 miles | NW |
| Indian Creek | Lincoln, NM | 38.3 miles | NW |
| Cherry Creek | Lincoln, NM | 38.7 miles | NE |
| Rio Bonito | Lincoln, NM | 40.3 miles | NE |
| Rio Ruidoso | Lincoln, NM | 40.4 miles | NE |
| Baca Spring Creek | Lincoln, NM | 40.5 miles | NE |
| Oso Creek | Lincoln, NM | 42.2 miles | NE |
| Andrecito Creek | Dona Ana, NM | 42.3 miles | SW |
| Magado Creek | Lincoln, NM | 42.4 miles | NE |
| Salado Creek | Lincoln, NM | 42.9 miles | NE |
| North Fork Salado Creek | Lincoln, NM | 43.7 miles | NE |
| Sacramento River | Otero, NM | 43.9 miles | SE |
| South Fork Salado Creek | Lincoln, NM | 44 miles | NE |
| Tortolita Creek | Lincoln, NM | 44.2 miles | NE |
| Indian Trail Creek | Chaves, NM | 44.8 miles | SE |
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